Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs17702475 chr4:167901033 A/G 0.000119 119 38.83 50.07 28.43 KM Plot
THYM rs17720676 chr8:50168386 A/G 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs17721300 chr8:50201615 C/T 2.31E-10 119 46.07 50.82 25.83 KM Plot
THYM rs17721360 chr8:50202849 C/G 2.31E-10 119 46.07 50.82 25.83 KM Plot
THYM rs17722044 chr8:50232086 A/C 1.71E-10 119 46.6 49.4 25.83 KM Plot
THYM rs17760586 chr8:135514129 T/C 1.77E-12 114 41.77 42.37 6 KM Plot
THYM rs17766596 chr6:12558084 G/A 0.000254 118 41.77 40.67 35.67 KM Plot
THYM rs17832277 chr1:232265903 C/T 5.81E-13 119 3.97 38.33 42.82 KM Plot
THYM rs17832385 chr1:232269234 C/T 5.81E-13 119 42.82 38.33 3.97 KM Plot
THYM rs17855260 chr7:76132898 T/C 3.58E-5 115 40.67 46.6 28.43 KM Plot
THYM rs1799379 chr7:47482716 C/T 4.8E-6 119 34.87 51.23 19.03 KM Plot
THYM rs1801206 chr4:6302707 C/T 2.34E-6 119 25.83 38.58 50.1 KM Plot
THYM rs1801214 chr4:6303022 C/T 1.31E-6 117 28.43 38.83 50.07 KM Plot
THYM rs1806411 chr13:22519758 G/A 0.000281 118 41.77 32.7 27.1 KM Plot
THYM rs1808307 chr7:76139115 T/A 0.000249 119 40.67 45.87 28.43 KM Plot